It's all good.
Alright, I didn't know for sure how much of the optional stuff you completed, so I uploaded two files, both at the beginning of Day 4. Save 02 has almost none of the optional stuff completed except for defeating Yen Karis, the "Assassin's Den" sidequest (because both have to be done before completing Mosquito Swamp), and "Rescue Duchess Citronelle" sidequest, along with recruiting Sandy, Guld, and Nash. Save 04 has almost all of the optional stuff completed except for the Shrine of Yveen quest and a couple others.
Hope these help!